Difference between revisions of "Compare site models (analysis)"
From BioUML platform
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;Analysis title | ;Analysis title | ||
| − | :[[File: | + | :[[File:Default-analysis-icon.png]] Compare site models |
;Provider | ;Provider | ||
:[[Institute of Systems Biology]] | :[[Institute of Systems Biology]] | ||
| + | ;Class | ||
| + | :{{Class|ru.biosoft.bsa.analysis.motifcompare.MotifCompare}} | ||
;Plugin | ;Plugin | ||
:[[Ru.biosoft.bsa (plugin)|ru.biosoft.bsa (Bio-sequences analyses plugin)]] | :[[Ru.biosoft.bsa (plugin)|ru.biosoft.bsa (Bio-sequences analyses plugin)]] | ||
==== Description ==== | ==== Description ==== | ||
| − | Compare site models with ROC curve | + | Compare site models with ROC curve. |
==== Parameters: ==== | ==== Parameters: ==== | ||
| Line 20: | Line 22: | ||
[[Category:Analyses]] | [[Category:Analyses]] | ||
| − | [[Category: | + | [[Category:Motif discovery (analyses group)]] |
[[Category:ISB analyses]] | [[Category:ISB analyses]] | ||
[[Category:Autogenerated pages]] | [[Category:Autogenerated pages]] | ||
Latest revision as of 18:15, 9 December 2020
- Analysis title
Compare site models
- Provider
- Institute of Systems Biology
- Class
MotifCompare- Plugin
- ru.biosoft.bsa (Bio-sequences analyses plugin)
[edit] Description
Compare site models with ROC curve.
[edit] Parameters:
- Site models – Site models
- Sequences – Sequences containing motifs
- Background sequences – Background sequences
- Number of permutations (expert) – Number of permutations of the sequences to perform when computing false positive rates
- Seed (expert) – Seed for random number generator
- Model FDR (expert) – Set models threshold to match specified FDR
- Output table – Output table (will be created if not exists)
