Difference between revisions of "Compare site models (analysis)"

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(Class name added)
(Default analysis icon as separate file)
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;Analysis title
 
;Analysis title
:[[File:BSA-Compare-site-models-icon.png]] Compare site models
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:[[File:Default-analysis-icon.png]] Compare site models
 
;Provider
 
;Provider
 
:[[Institute of Systems Biology]]
 
:[[Institute of Systems Biology]]

Revision as of 18:06, 14 June 2013

Analysis title
Default-analysis-icon.png Compare site models
Provider
Institute of Systems Biology
Class
MotifCompare
Plugin
ru.biosoft.bsa (Bio-sequences analyses plugin)

Description

Compare site models with ROC curve

Parameters:

  • Site models – Site models
  • Sequences – Sequences containing motifs
  • Background sequences – Background sequences
  • Number of permutations (expert) – Number of permutations of the sequences to perform when computing false positive rates
  • Seed (expert) – Seed for random number generator
  • Model FDR (expert) – Set models threshold to match specified FDR
  • Output table – Output table (will be created if not exists)
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