Difference between revisions of "Compare site models (analysis)"

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:[[Institute of Systems Biology]]
 
:[[Institute of Systems Biology]]
 
;Plugin
 
;Plugin
:ru.biosoft.bsa (Bio-sequences analyses plugin)
+
:[[Ru.biosoft.bsa (plugin)|ru.biosoft.bsa (Bio-sequences analyses plugin)]]
  
 
==== Description ====
 
==== Description ====

Revision as of 10:50, 7 May 2013

Analysis title
File:BSA-Compare-site-models-icon.png Compare site models
Provider
Institute of Systems Biology
Plugin
ru.biosoft.bsa (Bio-sequences analyses plugin)

Description

Compare site models with ROC curve

Parameters:

  • Site models – Site models
  • Sequences – Sequences containing motifs
  • Background sequences – Background sequences
  • Number of permutations (expert) – Number of permutations of the sequences to perform when computing false positive rates
  • Seed (expert) – Seed for random number generator
  • Model FDR (expert) – Set models threshold to match specified FDR
  • Output table – Output table (will be created if not exists)
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