Difference between revisions of "Cluster track (analysis)"

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(Automatic synchronization with BioUML)
 
(Automatic synchronization with BioUML)
 
(3 intermediate revisions by one user not shown)
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;Analysis title
 
;Analysis title
:[[File:Default-analysis-icon.png]] Cluster track
+
:[[File:Operations-with-genomic-tracks-Cluster-track-icon.png]] Cluster track
 
;Provider
 
;Provider
 
:[[Institute of Systems Biology]]
 
:[[Institute of Systems Biology]]
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==== Description ====
 
==== Description ====
Cluster sites in track
+
ru/biosoft/bsa/analysis/resources/cluster_track_analysis.html
  
 
==== Parameters: ====
 
==== Parameters: ====
  
 
* '''Input track''' – Input track
 
* '''Input track''' – Input track
 +
* '''Genome''' – Reference genome
 +
** '''Sequences source''' – Select database to get sequences from or <nowiki>'</nowiki>Custom<nowiki>'</nowiki> to specify sequences location manually
 +
** '''Sequence collection''' – Specify path to folder containing sequences if <nowiki>'</nowiki>Custom<nowiki>'</nowiki> sequences source is selected
 
* '''Max distance''' – Maximum allowed distance between adjacent sites in cluster
 
* '''Max distance''' – Maximum allowed distance between adjacent sites in cluster
 
* '''Cluster size''' – Minimal size of cluster
 
* '''Cluster size''' – Minimal size of cluster
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[[Category:Analyses]]
 
[[Category:Analyses]]
[[Category:BSA (analyses group)]]
+
[[Category:Operations with genomic tracks (analyses group)]]
 
[[Category:ISB analyses]]
 
[[Category:ISB analyses]]
 
[[Category:Autogenerated pages]]
 
[[Category:Autogenerated pages]]

Latest revision as of 18:15, 9 December 2020

Analysis title
Operations-with-genomic-tracks-Cluster-track-icon.png Cluster track
Provider
Institute of Systems Biology
Class
ClusterTrack
Plugin
ru.biosoft.bsa (Bio-sequences analyses plugin)

[edit] Description

ru/biosoft/bsa/analysis/resources/cluster_track_analysis.html

[edit] Parameters:

  • Input track – Input track
  • Genome – Reference genome
    • Sequences source – Select database to get sequences from or 'Custom' to specify sequences location manually
    • Sequence collection – Specify path to folder containing sequences if 'Custom' sequences source is selected
  • Max distance – Maximum allowed distance between adjacent sites in cluster
  • Cluster size – Minimal size of cluster
  • Cluster track – Resulting track with cluster sites
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