Difference between revisions of "CloudBioLinux"

Latest revision as of 21:53, 5 January 2014

CloudBioLinux - a build and deployment system which installs a large selection of Bioinformatics and machine learning libraries on a bare virtual machine (VM) image, freshly installed PC, or in the Cloud.

By default it includes a large suite of tools installed through the default distribution installer, native installers, and libraries for Perl, R, Python, Java and Ruby.

CloudBioLinux included software packages are fully customizable. In addition to the default configuration, they support custom configuration builds through flavors. Flavors support overriding default package installations, making it simple to create derived installs for specific purposes.

CloudBioLinux is a single install route for:

• desktop machines
• desktop and cloud VM
  • VirtualBox
  • XEN
  • Linux KVM
• clouds
  • Amazon EC2
  • Openstack
  • Eucalyptus

Links:

• web site - http://cloudbiolinux.org/
• source code - https://github.com/afgane/cloudbiolinux

Details:

• Machine images - http://thecloudmarket.com/search?search_term=cloudbiolinux&order=updated_at%20desc
• Included software (configuration files in YAML format) - https://github.com/chapmanb/cloudbiolinux/tree/master/config/#readme
• Included software (JCVI Cloud BioLinux image) - http://www.jcvi.org/cms/research/projects/jcvi-cloud-biolinux/included-software/

JCVI and CloudBioLinux - http://www.jcvi.org/cms/research/projects/jcvi-cloud-biolinux/overview/

Publications

1. Error fetching PMID 22700313: [Afgan2012]
2. Error fetching PMID 22429538: [Krampis2012]