Difference between revisions of "ChIP-seq peak profile (analysis)"

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Revision as of 15:21, 4 April 2013

This analysis allows you to compute probability profiles for Chip-seq peaks.

Parameters:

  • Peak track – Track with ChIP-seq peaks
  • Tag track – Track with aligned tags (reads)
  • Fragment size – Mean size of DNA fragments used in immunoprecipitation
  • Sigma – Sigma parameter used to model peak shape
  • Error rate – Error rate
  • Profiled track – Profiled track
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