Difference between revisions of "ChIP-seq peak profile (analysis)"
From BioUML platform
(Mistaken file names update reverted) |
(Class name added) |
||
| Line 3: | Line 3: | ||
;Provider | ;Provider | ||
:[[Institute of Systems Biology]] | :[[Institute of Systems Biology]] | ||
| + | ;Class | ||
| + | :{{Class|ru.biosoft.bsa.analysis.chipseqprofile.ChIPSeqProfileAnalysis}} | ||
;Plugin | ;Plugin | ||
:[[Ru.biosoft.bsa (plugin)|ru.biosoft.bsa (Bio-sequences analyses plugin)]] | :[[Ru.biosoft.bsa (plugin)|ru.biosoft.bsa (Bio-sequences analyses plugin)]] | ||
Revision as of 11:13, 31 May 2013
- Analysis title
ChIP-seq peak profile
- Provider
- Institute of Systems Biology
- Class
ChIPSeqProfileAnalysis- Plugin
- ru.biosoft.bsa (Bio-sequences analyses plugin)
Description
This analysis allows you to compute probability profiles for Chip-seq peaks.
Parameters:
- Peak track – Track with ChIP-seq peaks
- Tag track – Track with aligned tags (reads)
- Fragment size – Mean size of DNA fragments used in immunoprecipitation
- Sigma – Sigma parameter used to model peak shape
- Error rate – Error rate
- Profiled track – Profiled track
