Difference between revisions of "ChIP-seq peak profile (analysis)"
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:[[Institute of Systems Biology]] | :[[Institute of Systems Biology]] | ||
Revision as of 12:32, 16 May 2013
- Analysis title
- File:ChIP-seq-peak-profile-analysis-icon.png ChIP-seq peak profile
- Provider
- Institute of Systems Biology
- Plugin
- ru.biosoft.bsa (Bio-sequences analyses plugin)
Description
This analysis allows you to compute probability profiles for Chip-seq peaks.
Parameters:
- Peak track – Track with ChIP-seq peaks
- Tag track – Track with aligned tags (reads)
- Fragment size – Mean size of DNA fragments used in immunoprecipitation
- Sigma – Sigma parameter used to model peak shape
- Error rate – Error rate
- Profiled track – Profiled track
