Difference between revisions of "ChIP-seq peak profile (analysis)"

From BioUML platform
Jump to: navigation, search
(Space after icon)
(Plugin name added)
Line 3: Line 3:
 
;Provider
 
;Provider
 
:[[Institute of Systems Biology]]
 
:[[Institute of Systems Biology]]
 +
;Plugin
 +
:ru.biosoft.bsa (Bio-sequences analyses plugin)
  
 
==== Description ====
 
==== Description ====

Revision as of 11:46, 6 May 2013

Analysis title
BSA-ChIP-seq-peak-profile-icon.png ChIP-seq peak profile
Provider
Institute of Systems Biology
Plugin
ru.biosoft.bsa (Bio-sequences analyses plugin)

Description

This analysis allows you to compute probability profiles for Chip-seq peaks.

Parameters:

  • Peak track – Track with ChIP-seq peaks
  • Tag track – Track with aligned tags (reads)
  • Fragment size – Mean size of DNA fragments used in immunoprecipitation
  • Sigma – Sigma parameter used to model peak shape
  • Error rate – Error rate
  • Profiled track – Profiled track
Personal tools
Namespaces

Variants
Actions
BioUML platform
Community
Modelling
Analysis & Workflows
Collaborative research
Development
Virtual biology
Wiki
Toolbox