Difference between revisions of "ChIP-seq peak profile (analysis)"

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;Analysis title
 
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:[[File:BSA-ChIP-seq-peak-profile-icon.png]]ChIP-seq peak profile
 
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:[[Institute of Systems Biology]]
 
:[[Institute of Systems Biology]]

Revision as of 16:56, 23 April 2013

Analysis title
BSA-ChIP-seq-peak-profile-icon.pngChIP-seq peak profile
Provider
Institute of Systems Biology

Description

This analysis allows you to compute probability profiles for Chip-seq peaks.

Parameters:

  • Peak track – Track with ChIP-seq peaks
  • Tag track – Track with aligned tags (reads)
  • Fragment size – Mean size of DNA fragments used in immunoprecipitation
  • Sigma – Sigma parameter used to model peak shape
  • Error rate – Error rate
  • Profiled track – Profiled track
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