Difference between revisions of "CNVnator genotype output (file format)"

Revision as of 16:28, 4 April 2013

CNVnator genotype output (*.genotype)

These files produced by CNVnator software. Each output file is space-separated text file, which consists of the following columns:

1. "Genotype" word
2. Chromosomic position like "chr1:99801-100600"
3. Source
4. Number of copies
5. Number of copies for low coverage samples

Examplee:

Genotype chrM:1-16600 5173T.root 576.984 563.799
Genotype chr1:1-13000 5173T.root 0.377524 0.368896
Genotype chr1:17601-51400 5173T.root 0.178211 0.174139
Genotype chr1:53301-54000 5173T.root 0.174089 0.170111
Genotype chr1:64201-64600 5173T.root 0.195805 0.19133

References

1. Gersteinlab home page
2. CNVnator download page