Difference between revisions of "CNVnator genotype output (file format)"
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| + | :CNVnator genotype output (*.genotype) | ||
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| + | :[[Ru.biosoft.bsa (plugin)|ru.biosoft.bsa (Bio-sequences analyses plugin)]] | ||
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=== CNVnator genotype output (*.genotype) === | === CNVnator genotype output (*.genotype) === | ||
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# Number of copies for low coverage samples | # Number of copies for low coverage samples | ||
| − | ==== | + | ==== Example: ==== |
Genotype chrM:1-16600 5173T.root 576.984 563.799 | Genotype chrM:1-16600 5173T.root 576.984 563.799 | ||
Revision as of 14:12, 7 May 2013
- File format title
- CNVnator genotype output (*.genotype)
- Plugin
- ru.biosoft.bsa (Bio-sequences analyses plugin)
CNVnator genotype output (*.genotype)
These files produced by CNVnator software. Each output file is space-separated text file, which consists of the following columns:
- "Genotype" word
- Chromosomic position like "chr1:99801-100600"
- Source
- Number of copies
- Number of copies for low coverage samples
Example:
Genotype chrM:1-16600 5173T.root 576.984 563.799 Genotype chr1:1-13000 5173T.root 0.377524 0.368896 Genotype chr1:17601-51400 5173T.root 0.178211 0.174139 Genotype chr1:53301-54000 5173T.root 0.174089 0.170111 Genotype chr1:64201-64600 5173T.root 0.195805 0.19133
