View source for Biouml.plugins.bindingregions (plugin)

;ID
:biouml.plugins.bindingregions
;Name
:Binding-regions related analyses
;Provider
:[[Institute of Systems Biology]]
;Version
:0.9.10

=== Extension points ===
Extension points defined in this plugin:
*[[Site model factory (extension point)|biouml.plugins.bindingregions.siteModelFactory]]

=== Analysis methods ===
Analysis methods defined in this plugin:
*[[File:Default-analysis-icon.png]] [[Analysis of Binding Regions (analysis)|Analysis of Binding Regions]]
*[[File:Default-analysis-icon.png]] [[Analysis of Cis-Regulatory Modules (analysis)|Analysis of Cis-Regulatory Modules]]
*[[File:Default-analysis-icon.png]] [[Binding regions summary (analysis)|Binding regions summary]]
*[[File:Default-analysis-icon.png]] [[CRISPR Cas9 and specific oligonucleotides (analysis)|CRISPR Cas9 and specific oligonucleotides]]
*[[File:Default-analysis-icon.png]] [[ChIP-Seq characteristics distribution (analysis)|ChIP-Seq characteristics distribution]]
*[[File:Default-analysis-icon.png]] [[ChIP-Seq peaks clusterization (analysis)|ChIP-Seq peaks clusterization]]
*[[File:Default-analysis-icon.png]] [[Cis-module identification (analysis)|Cis-module identification]]
*[[File:Default-analysis-icon.png]] [[Cis-module sets near given genes (analysis)|Cis-module sets near given genes]]
*[[File:Default-analysis-icon.png]] [[Classification analysis]]
*[[File:Default-analysis-icon.png]] [[Cluster analysis]]
*[[File:Default-analysis-icon.png]] [[Common and IPS scores correlation (analysis)|Common and IPS scores correlation]]
*[[File:Default-analysis-icon.png]] [[Convert files to tracks (analysis)|Convert files to tracks]]
*[[File:Default-analysis-icon.png]] [[Correlations of best sites (analysis)|Correlations of best sites]]
*[[File:Default-analysis-icon.png]] [[Count olig frequencies (analysis)|Count olig frequencies]]
*[[File:Default-analysis-icon.png]] [[Create matrix by mixture of normal components (analysis)|Create matrix by mixture of normal components]]
*[[File:Default-analysis-icon.png]] [[Distinct TF classes (analysis)|Distinct TF classes]]
*[[File:Default-analysis-icon.png]] [[Filtration of predicted sites by filters (analysis)|Filtration of predicted sites by filters]]
*[[File:Default-analysis-icon.png]] [[Gathering genome statistics (analysis)|Gathering genome statistics]]
*[[File:Default-analysis-icon.png]] [[IPS ROC-curves (analysis)|IPS ROC-curves]]
*[[File:Default-analysis-icon.png]] [[IPS prediction (analysis)|IPS prediction]]
*[[File:Default-analysis-icon.png]] [[IPS-scores in SNPs (analysis)|IPS-scores in SNPs]]
*[[File:Default-analysis-icon.png]] [[Identical best site ROC-curves (analysis)|Identical best site ROC-curves]]
*[[File:Default-analysis-icon.png]] [[Identification of cis-regulatory modules with given pattern of TF-classes (analysis)|Identification of cis-regulatory modules with given pattern of TF-classes]]
*[[File:Default-analysis-icon.png]] [[Identification of composite elements by filters (analysis)|Identification of composite elements by filters]]
*[[File:Default-analysis-icon.png]] [[LS-regression analysis]]
*[[File:Default-analysis-icon.png]] [[Locations of best sites (analysis)|Locations of best sites]]
*[[File:Default-analysis-icon.png]] [[Matrix comparison (analysis)|Matrix comparison]]
*[[File:Default-analysis-icon.png]] [[Matrix derivation (analysis)|Matrix derivation]]
*[[File:Default-analysis-icon.png]] [[Merge binding regions for cell-lines (analysis)|Merge binding regions for cell-lines]]
*[[File:Default-analysis-icon.png]] [[Mixture of normal components (analysis)|Mixture of normal components]]
*[[File:Default-analysis-icon.png]] [[Multivariate regression analysis]]
*[[File:Default-analysis-icon.png]] [[Multivariate sample analysis]]
*[[File:Default-analysis-icon.png]] [[Non-merged ChIP-Seq tracks summary (analysis)|Non-merged ChIP-Seq tracks summary]]
*[[File:Default-analysis-icon.png]] [[Oligonucleotides in sequence samples (analysis)|Oligonucleotides in sequence samples]]
*[[File:Default-analysis-icon.png]] [[Peak finders comparison (analysis)|Peak finders comparison]]
*[[File:Default-analysis-icon.png]] [[Prediction of TF-binding sites of given TF (analysis)|Prediction of TF-binding sites of given TF]]
*[[File:Default-analysis-icon.png]] [[ROC curves for best sites union (analysis)|ROC curves for best sites union]]
*[[File:Default-analysis-icon.png]] [[ROC-curves in clusterized peaks (analysis)|ROC-curves in clusterized peaks]]
*[[File:Default-analysis-icon.png]] [[ROC-curves in grouped peaks (analysis)|ROC-curves in grouped peaks]]
*[[File:Default-analysis-icon.png]] [[ROC-curves in overlapped ChIP-Seq peaks (analysis)|ROC-curves in overlapped ChIP-Seq peaks]]
*[[File:Default-analysis-icon.png]] [[Regression analysis]]
*[[File:Default-analysis-icon.png]] [[Ribo-Seq and mRNA features forming (analysis)|Ribo-Seq and mRNA features forming]]
*[[File:Default-analysis-icon.png]] [[SNP regions in genome (analysis)|SNP regions in genome]]
*[[File:Default-analysis-icon.png]] [[SNPs in binding regions (analysis)|SNPs in binding regions]]
*[[File:Default-analysis-icon.png]] [[Summary on AUCs (analysis)|Summary on AUCs]]
*[[File:Default-analysis-icon.png]] [[Transform track to table (analysis)|Transform track to table]]
*[[File:Default-analysis-icon.png]] [[Two multivariate sample analysis]]
*[[File:Default-analysis-icon.png]] [[Univariate sample analysis]]
*[[File:Default-analysis-icon.png]] [[Univariate samples analysis]]
*[[File:Default-analysis-icon.png]] [[LincRNA and mRNA features (analysis)|lincRNA and mRNA features]]

[[Category:Plugins]]
[[Category:ISB plugins]]
[[Category:Autogenerated pages]]