Difference between revisions of "Add reactants (analysis)"

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;Analysis title
 
;Analysis title
:[[File:Default-analysis-icon.png]] Add reactants
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:[[File:Molecular-networks-Add-reactants-icon.png]] Add reactants
 
;Provider
 
;Provider
 
:[[geneXplain GmbH]]
 
:[[geneXplain GmbH]]
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==== Description ====
 
==== Description ====
Add missing reactants/products to reactions of existing diagram
+
Results of '''effector/regulator search''', '''longest chains finder''' and results of other similar analyses contains only essential elements, so visualizations of such results, which are usually used as scaffold of the signalling paths, contains only necessary elements. But if one would like to model all the dynamics or all the fluxes, diagram which contains all reactants/products fro each reaction is needed.
 +
 
 +
This analysis adds missing reactants/products to reactions of existing diagram.
  
 
==== Parameters: ====
 
==== Parameters: ====
  
 
* '''Input diagram''' – Result of network visualization
 
* '''Input diagram''' – Result of network visualization
* '''Species''' – Species
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* '''Species''' – Species to which analysis should be confined
 
* '''BioHub''' – BioHub to use
 
* '''BioHub''' – BioHub to use
 
* '''Output diagram''' – Full path to the output
 
* '''Output diagram''' – Full path to the output

Revision as of 19:01, 13 February 2017

Analysis title
Molecular-networks-Add-reactants-icon.png Add reactants
Provider
geneXplain GmbH
Class
AddReactantsAnalysis
Plugin
biouml.plugins.keynodes (Master regulator node analysis plugin)

Description

Results of effector/regulator search, longest chains finder and results of other similar analyses contains only essential elements, so visualizations of such results, which are usually used as scaffold of the signalling paths, contains only necessary elements. But if one would like to model all the dynamics or all the fluxes, diagram which contains all reactants/products fro each reaction is needed.

This analysis adds missing reactants/products to reactions of existing diagram.

Parameters:

  • Input diagram – Result of network visualization
  • Species – Species to which analysis should be confined
  • BioHub – BioHub to use
  • Output diagram – Full path to the output
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