Add expression values (analysis)

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Revision as of 17:03, 23 April 2013 by BioUML wiki Bot (Talk | contribs)

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Analysis title
Molecular-networks-Add-expression-values-icon.png Add expression values
Provider
Institute of Systems Biology

Description

This analysis allows you to display expression values as molecules background on the specified diagram.

Parameters:

  • Input diagram – Input diagram
  • Mapping properties – Mapping properties
    • Table – Table to use expression values from
    • Use outside fill – When checked, outside fill will be used
    • Outside filling options – Outside filling options
      • Columns – List of columns to create outside fill
      • Width of the fill – Range from 1 to 40
      • Minimum value – Lowest value in the selected columns
      • Start-color – Color for minimum value
      • Maximum value – Highest value in the selected columns
      • End-color – Color for maximum value
      • Use color for zero – If checked, zero-color will be used to represent zero value
      • Zero color – Color to represent zero value. Used only if minimum value 0, maximum value > 0 and 'Use color for zero' is checked.
      • Zero level – Value at which zero color will be used
    • Use inside fill – When checked, inside fill will be used
    • Inside filling options – Inside filling options
      • Column – Column to create inside fill
      • Minimum value – Lowest value in the selected columns
      • Start-color – Color for minimum value
      • Maximum value – Highest value in the selected columns
      • End-color – Color for maximum value
      • Use color for zero – If checked, zero-color will be used to represent zero value
      • Zero color – Color to represent zero value. Used only if minimum value 0, maximum value > 0 and 'Use color for zero' is checked.
      • Zero level – Value at which zero color will be used
    • Use p-value stars – When checked, a number of stars will be added to matched elements depending on p-value
    • P-value stars options – *** options
      • Column – Column with p-values
      • * cutoff – If value below this cutoff, one star is displayed
      • ** cutoff – If value below this cutoff, two stars are displayed
      • *** cutoff – If value below this cutoff, three stars are displayed
  • Output diagram – Output diagram
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