Difference between revisions of "Add expression values (analysis)"

Revision as of 15:43, 18 April 2013

Analysis title

Add expression values

Provider

Institute of Systems Biology

Description

This analysis allows you to display expression values as molecules background on the specified diagram.

Parameters:

• Input diagram – Input diagram
• Mapping properties – Mapping properties
  • Table – Table to use expression values from
  • Use outside fill – When checked, outside fill will be used
  • Outside filling options – Outside filling options
    • Columns – List of columns to create outside fill
    • Width of the fill – Range from 1 to 40
    • Minimum value – Lowest value in the selected columns
    • Start-color – Color for minimum value
    • Maximum value – Highest value in the selected columns
    • End-color – Color for maximum value
    • Use color for zero – If checked, zero-color will be used to represent zero value
    • Zero color – Color to represent zero value. Used only if minimum value 0, maximum value > 0 and 'Use color for zero' is checked.
    • Zero level – Value at which zero color will be used
  • Use inside fill – When checked, inside fill will be used
  • Inside filling options – Inside filling options
    • Column – Column to create inside fill
    • Minimum value – Lowest value in the selected columns
    • Start-color – Color for minimum value
    • Maximum value – Highest value in the selected columns
    • End-color – Color for maximum value
    • Use color for zero – If checked, zero-color will be used to represent zero value
    • Zero color – Color to represent zero value. Used only if minimum value 0, maximum value > 0 and 'Use color for zero' is checked.
    • Zero level – Value at which zero color will be used
  • Use p-value stars – When checked, a number of stars will be added to matched elements depending on p-value
  • P-value stars options – *** options
    • Column – Column with p-values
    • * cutoff – If value below this cutoff, one star is displayed
    • ** cutoff – If value below this cutoff, two stars are displayed
    • *** cutoff – If value below this cutoff, three stars are displayed
• Output diagram – Output diagram