IPS prediction (analysis)
From BioUML platform
- Analysis title
IPS prediction
- Provider
- Institute of Systems Biology
- Class
IPSPredictionAnalysis- Plugin
- biouml.plugins.bindingregions (Binding-regions related analyses)
Description
IPS-prediction and tag density
Parameters:
- Sequences collection – Select a source of nucleotide sequences
- Sequences source – Select database to get sequences from or 'Custom' to specify sequences location manually
- Sequence collection – Specify path to folder containing sequences if 'Custom' sequences source is selected
- Folder containing ChIP-seq tracks – Folder containing ChIP-seq tracks
- Matrix – Path to frequency matrix
- Species – Select a taxonomical species
- TF class – TF class in Wingender classification (like '2.1.1.1.4')
- Output table – Table with charts will be created in this location
