ComputeProfileSums (analysis)
From BioUML platform
- Analysis title
ComputeProfileSums
- Provider
- Institute of Systems Biology
- Class
ComputeProfileSums- Plugin
- biouml.plugins.riboseq (RiboSeq Experiment)
Description
Compute sums of footprint profile.
Parameters:
- BAM files – BAM files with genomic alignments
- Transcript set – Transcript set
- Annotation source – Source of gene annotation
- Transcripts annotation track – Track with transcripts annotation in BED format
- Genome sequence – Collection of chromosomal sequences
- Ensembl – Ensembl database version
- Transcript subset – Subset of transcripts used in this analysis
- GTF file – GTF file
- Transcript overhangs – Transcript overhangs
- Strand specific – In strand specific protocol reads can come only from positive strand of transcript
- Ribosome A-site offset table – Table with 2 columns: 'Length' and 'Offset'
- Profile sums – Profile sums
- Result path – Path to resulting table
