Process track with sites (analysis)

Analysis title

Process track with sites

Provider

Institute of Systems Biology

Class

ProcessTrack

Plugin

ru.biosoft.bsa (Bio-sequences analyses plugin)

Description

This analysis enlarges/shrinks sites on the track, merges overlapping sites or removes too short sites.

Parameters:

• Source track – Track you want to process
• Sequences – Sequences to use
• Shrink sites to zero length? – When shrink mode is selected, the sites are shrinked to zero length before further processing
• Enlarge sites at start – Use positive numbers to enlarge and negative to shrink
• Enlarge sites at end – Use positive numbers to enlarge and negative to shrink
• Merge overlapping – Merges overlapping sites into a single site. Site annotations will be lost!
• Remove small sites – If checked, sites smaller then 'Minimal site size' will be removed, otherwise they will be expanded to 'Minimal site size'
• Minimal site size – Sites shorter than specified size will be removed from output
• Output track – Path for processed track