MicroRNA finder (analysis)

Analysis title

MicroRNA finder

Provider

Institute of Systems Biology

Class

MicroRNAFinder

Plugin

ru.biosoft.bsa (Bio-sequences analyses plugin)

Description

Finds novel microRNA from genomic alignments of NGS reads.

Parameters:

• Alignments – Genomic alignments of microRNA reads
• Genome – Reference genome used for alignment
  • Sequences source – Select database to get sequences from or 'Custom' to specify sequences location manually
  • Sequence collection – Specify path to folder containing sequences if 'Custom' sequences source is selected
• Minimal cluster size – Minimal number of reads in cluster
• Maximum read distance – Maxim distance between adjacent reads in cluster
• Clusters – Resulting read clusters
• Primary isoforms – Resulting primary microRNA isoforms
• Longest isoforms – Resulting longest microRNA isoforms