Sites genome location (analysis)

Analysis title

Sites genome location

Provider

Institute of Systems Biology

Class

SitesGenomeLocation

Plugin

biouml.plugins.gtrd (GTRD)

Description

Count TSS and/or repeats

Parameters:

• organism – choose organism, for wich you will analyze tracks
• analyze all files in folder – choose, if you need analyze all files in folder, and unclock if you need to choose tracks
• path to input folder – path to folder with SQL tracks
• track names – track names
• Change sites size – change miniml size of the sites
• write sites size – write miniml size of the sites
• choose repeats type's – choose repeats type's wich you need to analyse
• Count repeats in track – Count repeats in track
• Count TSS in track – Count TSS in track
• Upstream – Choose - N nucleotides from TSS
• Downstream – Choose + N nucleotides from TSS
• number of threads – number of threads
• output name – write name of putput file
• Record result to GTRD database – Record result to GTRD database
• write new table – record new table to GTRD database
• write data to existed table – record data to existed table in GTRD database
• nameOfExistedTable – nameOfExistedTable
• path to output folder – path to output folder