Quality control analysis
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Revision as of 18:14, 9 December 2020 by BioUML wiki Bot (Talk | contribs)
- Analysis title
Quality control analysis
- Provider
- Institute of Systems Biology
- Class
QualityControlAnalysis- Plugin
- biouml.plugins.gtrd (GTRD)
Description
Calculation of quality control metrics for assessing tracks from GTRD and AUCs-applications.
Parameters:
- Data Type – Select data Type
- Type of combined peaks – Type of combined peaks
- Minimal length of binding region – Minimal length of binding region
- Maximal length of binding region – Maximal length of binding region
- FPCM threshold – FPCM threshold
- Do calculate AUCs – Do calculate AUCs
- Path to folder with site models – Path to folder with site models
- Site model name – Please, select site model name
- Sequences collection – Select a source of nucleotide sequences
- Sequences source – Select database to get sequences from or 'Custom' to specify sequences location manually
- Sequence collection – Specify path to folder containing sequences if 'Custom' sequences source is selected
- Parameters for case of several folders – Please, determine parameters for case of several folders
- Paths to data sets – Paths to data sets
- Parameters for case of single folder – Please, determine parameters for case of single folder
- Path to folder with files or tracks – Path to folder with bed-files or tracks
- File names – Select file names
- Path to output folder – Path to output folder
