Cistrom construction (analysis)
From BioUML platform
Revision as of 18:14, 9 December 2020 by BioUML wiki Bot (Talk | contribs)
- Analysis title
Cistrom construction
- Provider
- Institute of Systems Biology
- Class
CistromConstruction- Plugin
- biouml.plugins.bindingregions (Binding-regions related analyses)
Description
Cistrom construction
Parameters:
- Option – Please, select option (i.e. select the concrete session of given analysis).
- Species – Please, select a taxonomical species
- Path to folder with folders – Path to folder with folders (Each internal folder contains ChIP-seq tracks with peaks)
- Folders names – Please, select folders names
- Type of combined peaks – Please, select type of combined peaks
- Minimal length of peaks – All peaks that are shorter than this threshold will be prolongated
- Maximal length of peaks – All peaks that are longer than this threshold will be truncated
- Do perform quality control? – Do perform quality control?
- FPCM threshold – FPCM threshold
- Site number threshold – If size of a data set is less than this threshold, then data set will be excluded from rank aggregation
- Rank aggregation method – Please, select rank aggregation method
- Parameters for OPTION_01 – Parameters for OPTION_01
- Path to folder with cell lines – Path to folder with GTRD cell lines
- Cell line – Please, select cell line.
- Do remove cell treatments? – Do remove tracks when cell lines were treated?
- Path to output folder – Path to output folder
