Fastx clip
From BioUML platform
Revision as of 19:05, 25 March 2019 by Sergey Pintus (Talk | contribs)
What it does
This tool clips adapters from the 3'-end of the sequences in a FASTA/FASTQ file.
Clipping Illustration
Clipping Example
https://toolshed.g2.bx.psu.edu/repository/static/images/7b0084966c6cad76/fastx_clipper_example.png
In the above example:
- Sequence no. 1 was discarded since it wasn't clipped (i.e. didn't contain the adapter sequence). (Output parameter).
- Sequence no. 5 was discarded --- it's length (after clipping) was shorter than 15 nt (Minimum Sequence Length parameter).
