Currently GTRD (v17.11) indexes 12168 ChIP-seq experiments on sequence specific transcription factors for human, mouse and rat.
Some of the experiments indexed in GTRD were not processed by our unified workflow for different reasons, so such experiments only present in the GTRD metadata part but not in the peaks and clusters part.
Summary of ChIP-seq experiments
| Species |
Indexed ChIP-seq experiments |
Indexed control ChIP-seq experiments |
Processed ChIP-seq experiments |
Processed control ChIP-seq experiments
|
| Human |
5143 |
1676 |
4236 |
1367
|
| Mouse |
3751 |
1501 |
3488 |
1327
|
| Rat |
74 |
23 |
0 |
0
|
| Total |
8968 |
3200 |
7724 |
2694
|
Summary of transcription factors
| Species |
Indexed transcription factors |
Processed transcription factors
|
| Human |
819 |
682
|
| Mouse |
402 |
384
|
| Distinct TFClasses for Human+Mouse |
900 |
766
|
Top 10 transcription factors
| Transcription Factor |
Number of ChIP-seq experiments
|
| CTCF |
635
|
| ERα |
286
|
| AR |
275
|
| c-Myc |
204
|
| PU.1 |
194
|
| p65 |
158
|
| C/EBPβ |
152
|
| GR |
147
|
| FOXA1 |
141
|
| p53 |
119
|
Data summary
| Data type |
Count
|
| ChIP-seq reads |
508 023 543 763
|
| Reads aligned |
335 707 127 761
|
| ChIP-seq peaks |
961 923 622
|
| Clusters |
527 498 674
|
| Metaclusters |
70 338 813
|
