Estimate read density (analysis)

Estimate read density in transcripts and CDS using mappability information

Alignments – Genomic alignments of reads to transcriptome
Minimal unique length – Minimal unique length file, produced by 'Transcriptome minimal unique length' analysis
Transcript set – Transcript set
- Annotation source – Source of gene annotation
- Transcripts annotation track – Track with transcripts annotation in BED format
- Genome sequence – Collection of chromosomal sequences
- Ensembl – Ensembl database version
- Transcript subset – Subset of transcripts used in this analysis
- GTF file – GTF file
Strand specific – Count only reads mapped to forward strand of transcript
In CDS – Compute density in CDS
Min CDS overlap – Include only reads overlapping this number of nucleotides with CDS
Output density table – Output density table