Ribo-Seq and mRNA features forming (analysis)

Analysis title

Ribo-Seq and mRNA features forming

Provider

Institute of Systems Biology

Class

RiboSeqAndMrnaFeaturesForming

Plugin

biouml.plugins.bindingregions (Binding-regions related analyses)

Description

Create data matrix with Ribo-Seq and mRNA features and write it as TableDataCollection

Parameters:

• Ribo-Seq data set name – Select Ribo-Seq data set
• Path to folder with data sets – Path to folder with data sets
• Sequences collection – Select a source of nucleotide sequences
  • Sequences source – Select database to get sequences from or 'Custom' to specify sequences location manually
  • Sequence collection – Specify path to folder containing sequences if 'Custom' sequences source is selected
• Input track – Path to domestic track with Ribo-Seq dataset
• Minimal reads number threshold – Peaks for which number of reads exeeds this threshold will be analized
• Start codon type – Start codon type
• mRNA and Ribo-Seq features – Select mRNA and Ribo-Seq features
• Do exclude missing data? – Do exclude missing data? (If 'no' then possible missing data will be included as NaN-values
• Output table path – Path to the output table