Count reads in transcripts (analysis)
From BioUML platform
Revision as of 12:19, 25 August 2015 by BioUML wiki Bot (Talk | contribs)
- Analysis title
Count reads in transcripts
- Provider
- Institute of Systems Biology
- Class
CountReadsInTranscripts- Plugin
- biouml.plugins.ensembl (Support for Ensembl database and Ensembl-specific analyses)
Description
For each transcript count the number mapped NGS reads from BAM file
Parameters:
- BAM track – BAM track with read alignments
- Ensembl – Ensembl database
- Transcript subset – Calculate read count only for these transcripts
- Output table – Output table with read counts for each transcript
