ROC curves for best sites union (analysis)

Analysis title

ROC curves for best sites union

Provider

Institute of Systems Biology

Class

BestSitesUnionROCCurves

Plugin

biouml.plugins.bindingregions (Binding-regions related analyses)

Description

Best sites: ROC-curves; union of best sites in single chip-seq track; summit(yes/no); filtration (yes/no); matrix derivation.

Parameters:

• Input track – Select input peaks track (must be the result of MACS or SISSRs analysis)
• Sequences collection – Select a source of nucleotide sequences
  • Sequences source – Select database to get sequences from or 'Custom' to specify sequences location manually
  • Sequence collection – Specify path to folder containing sequences if 'Custom' sequences source is selected
• Is around summit – Is around summit
• Minimal region length – Minimal length of sequence region
• % of best sites – Best sites percentage
• Matrix – Path to positional weight matrix
• Filtration matrix – Path to filtration matrix
• Path to output folder – Output folder will be created under this location