Merge binding regions for cell-lines (analysis)

Analysis title

Merge binding regions for cell-lines

Provider

Institute of Systems Biology

Class

MergeCellLineBindingRegions

Plugin

ru.biosoft.bsa (Bio-sequences analyses plugin)

Description

Create cell-specific tracks with merged binding regions (creation of tables: 'bindingRegions_in_[CellLine*]')

Parameters:

• Sequences collection – Select a source of nucleotide sequences
  • Sequences source – Select database to get sequences from or 'Custom' to specify sequences location manually
  • Sequence collection – Specify path to folder containing sequences if 'Custom' sequences source is selected
• Folder containing ChIP-seq tracks – Folder containing ChIP-seq tracks
• Species – Select a taxonomical species
• Cell line synonyms table – Cell line synonyms table (must contain the 'newNameOfCellLine' column)
• Chromosome gaps table – Table containing chromosome gaps information (output of "Gathering genome statistics" analysis)
• Path to output folder – Output folder will be created under this location