IPS prediction (analysis)
From BioUML platform
Revision as of 15:31, 10 June 2013 by BioUML wiki Bot (Talk | contribs)
- Analysis title
- File:Binding-regions-IPS-prediction-icon.png IPS prediction
- Provider
- Institute of Systems Biology
- Class
IPSPrediction- Plugin
- ru.biosoft.bsa (Bio-sequences analyses plugin)
Description
IPS-prediction and tag density
Parameters:
- Sequences collection – Select a source of nucleotide sequences
- Sequences source – Select database to get sequences from or 'Custom' to specify sequences location manually
- Sequence collection – Specify path to folder containing sequences if 'Custom' sequences source is selected
- Folder containing ChIP-seq tracks – Folder containing ChIP-seq tracks
- Matrix – Path to positional weight matrix
- Species – Select a taxonomical species
- TF class – TF class in Wingender classification (like '2.1.1.1.4')
- Output table – Table with charts will be created in this location
