Distinct TF classes (analysis)
From BioUML platform
Revision as of 15:31, 10 June 2013 by BioUML wiki Bot (Talk | contribs)
- Analysis title
- File:Binding-regions-Distinct-TF-classes-icon.png Distinct TF classes
- Provider
- Institute of Systems Biology
- Class
DistinctTFClasses- Plugin
- ru.biosoft.bsa (Bio-sequences analyses plugin)
Description
Distinct TF classes: Identification of their binding regions as cisModules2 of their repeated tracks
Parameters:
- Sequences collection – Select a source of nucleotide sequences
- Sequences source – Select database to get sequences from or 'Custom' to specify sequences location manually
- Sequence collection – Specify path to folder containing sequences if 'Custom' sequences source is selected
- Folder containing ChIP-seq tracks – Folder containing ChIP-seq tracks
- Species – Select a taxonomical species
- Minimal number of overlaps – Minimal number of overlaps
- Path to output folder – Output folder will be created under this location
