Track coverage (analysis)
From BioUML platform
Revision as of 12:40, 16 May 2013 by BioUML wiki Bot (Talk | contribs)
- Analysis title
- File:BSA-Track-coverage-icon.png Track coverage
- Provider
- Institute of Systems Biology
- Plugin
- ru.biosoft.bsa (Bio-sequences analyses plugin)
Description
Calculates the coverage of given track
Parameters:
- Input track – Track to calculate coverage for
- Sequences – Collection of sequences
- Sequences source – Select database to get sequences from or 'Custom' to specify sequences location manually
- Sequence collection – Sequence collection
- Genome ID string – Something like 'hg18' or 'mm6'
- Window size – Size of the window to average the coverage
- Step – Number of bp to step (at least 1000)
- Output empty intervals – When checked, intervals without single site will appear in the output table as well
- Output table – Path to the output table
