Construct composite modules (analysis)
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- Analysis title
- Construct composite modules
- Provider
- Institute of Systems Biology
Description
Predict composite module using site search on genes result
Parameters:
- Site search result – Result of previous site search run with background track
- Genetic algorithm parameters (expert) – Genetic algorithm parameters
- Number of iterations – Number of iterations
- Population size – Population size
- Non-change limit – Number of iterations to stop after if best score is not improved
- Elite size – Number of elite organisms (i.e. best organisms to survive unconditionally)
- Mutation rate – This controls how often mutation occurs and how significant they are (0..1)
- Score calculation parameters (expert) – Parameters which control score calculation
- Penalty rate – Which penalty value will be assigned
- Site models in focus – At least one of these models must present in the resulting composite model to have non-zero score
- Model parameters – Model parameters
- Min modules – Minimal number of modules
- Max modules – Maximal number of modules
- Gaussian model (expert) – Gaussian model
- Min models – Minimal number of site models in module
- Max models – Maximal number of site models in module
- Min sites to account – Minimal number of sites to account
- Max sites to account – Maximal number of sites to account
- Min module width – Minimal width (sigma) of the module
- Max module width – Maximal width (sigma) of the module
- Output path – Path to store result