Model (host object)

Host object name

model

Class

JavaScriptModel

Plugin

biouml.workbench (BioUML workbench)

JavaScript host object

ScriptableObject model

Functions for the diagrams changing.

Functions:

• void addEquation(Diagram diagram, String type, String variable, String formula)
• void addEvent(Diagram diagram, String trigger, Double delay, Assignment[] actions)
• void addReaction(Diagram diagram, String formula[, Boolean faste], Double specieReferences)
• void addSpecies(Diagram diagram, String dataElementPath[, Double initialValue])
• void clearAllBoundaryConditions(Diagram diagram)
• void clearAllConstants(Diagram diagram)
• Diagram clone(Diagram diagram, String name)
• Assignment createAssignment(Diagram diagram, String variable, String math)
• SpecieReference createSpecieReference(Diagram diagram, String variable, String role[, Double stoichiometry])
• boolean getBoundaryCondition(Diagram diagram, String variableName)
• String[] getBoundaryConditions(Diagram diagram)
• String[] getConstants(Diagram diagram)
• double getInitialValue(Diagram diagram, String variableName)
• double[] getInitialValues(Diagram diagram, String[] variableNames)
• EModelRole getMath(Diagram diagram, String mathName)
• Variable getVariable(Diagram diagram, String variableName)
• String[] getVariableNames(Diagram diagram)
• Variable[] getVariables(Diagram diagram)
• boolean isConstant(Diagram diagram, String variableName)
• void setBoundaryCondition(Diagram diagram, String variableName, boolean value)
• void setBoundaryConditions(Diagram diagram, String[] variableNames)
• void setConstant(Diagram diagram, String variableName, boolean value)
• void setConstants(Diagram diagram, String[] variableNames)
• void setInitialValue(Diagram diagram, String variableName, double value)
• void setInitialValues(Diagram diagram[, String variableNames], double[] values)