This page describes the current plans for BioUML platform development in 2013 and includes a list of desired features that are not scheduled yet.
Users, administrators and developers are welcome with their comments and suggestions about new features as well as feature implementation priorities.
For this purpose, please, use the BioUML forum.
Plans for 2013
| Release |
Description |
Date
|
| v. 0.9.6
|
- Modelling
- Rule based modelling (implementation of BioNetGen approach)
- Antimony support
- Synchronisation between textual and graphical model representation (BioNetGen, Antimony)
- Interface improvements
- display name and actions for table cell values
- GTRD database
- perspective
- special start page
- improved web interface
- New methods for analysis of transcription factor binding sites
|
2013, August
|
| v. 0.9.7
|
- BioUML workbench (desktop version)
- Server
- grid version - pilot task manager integration with SGE via DRMAA virtualisation
- NGS
- R - improved interface (similar with RStudio)
|
2013, September
|
| v. 0.9.8
|
- Server installation
- repository - packages for Red Hat and Debian
- Puppet cookbooks for server updates
- Web interface
- mobile version (for web-browser)
- web interface improvements diagrams - convenient for exchange and editing
- NGS
- Integration with GenABEL
|
2013, Q4
|
| v. 0.9.9
|
- Server
- Further NGS analyses improvements
|
2013, Q4
|
Other desired features
| Component |
Features |
Priority
|
| Core
|
*Major refactoring: complex, macromolecule state, reaction
- Parameters fitting - optimization process as a workflow
- SED-ML as workflow
- Save optimization results as the diagram state
- SBGN-XML support
- Implementation of OQL subset for access to databases via BioUML object model
|
moderate
|
| Databases
|
- KEGG support improvements:
- Diagram export (KGML, BioPAX, SBML, +SVG, +PNG, +JPEG)
- Set up wizard
|
low
|
| Misc.
|
- SBRML support
- Further integration with MATLAB
|
low
|
See also
