Analysis of Cis-Regulatory Modules (analysis)

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Analysis title
Default-analysis-icon.png Analysis of Cis-Regulatory Modules
Provider
Institute of Systems Biology
Class
CisRegModule
Plugin
biouml.plugins.bindingregions (Binding-regions related analyses)

Parameters:

  • MODE – MODE defines the concrete session of given analysis. The detailed description of MODE see in panel 'Application Log'
  • Exp parameters – Exp parameters
    • Sequence path – Sequence path
  • ChIP-Seq Regions path – ChIP-Seq Regions path
  • Sequences path – It is nessecary for determination of Genome Build
  • Minimal number of overlaps – Minimally admissible number of overlapped ChIP-Seq regions
  • Specie – Specie
  • Table path – Path where to save resulting table (includes proper table name
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