Analysis of Cis-Regulatory Modules (analysis)

Analysis title

Analysis of Cis-Regulatory Modules

Provider

Institute of Systems Biology

Class

CisRegModule

Plugin

biouml.plugins.bindingregions (Binding-regions related analyses)

Parameters:

• MODE – MODE defines the concrete session of given analysis. The detailed description of MODE see in panel 'Application Log'
• Exp parameters – Exp parameters
  • Sequence path – Sequence path
• ChIP-Seq Regions path – ChIP-Seq Regions path
• Sequences path – It is nessecary for determination of Genome Build
• Minimal number of overlaps – Minimally admissible number of overlapped ChIP-Seq regions
• Specie – Specie
• Table path – Path where to save resulting table (includes proper table name