Steady State (analysis)

Analysis title

Steady State

Provider

Institute of Systems Biology

Class

SteadyStateAnalysis

Plugin

biouml.plugins.modelreduction (Model reduction plug-in)

Description

Model steady state finding.

Parameters:

• Diagram – Diagram for analysis.
• Steady state name – Steady state name if empty - steady state parameters will be set to default state.
• Result diagram – Diagram with steady state values.
• Variable names (expert) – Variables which values will be used for steady state detection. If no variables selected then all variables will be used
• Relative tolerance – Relative tolerance for the steady state checking.
• Absolute tolerance – Absolute tolerance for the steady state checking.
• Validation series size (expert) – Size of parameters time series for steady state check.
• Start search time (expert) – Time to start the steady state searching.
• Simulation options (expert) – Simulation engine, suitable for chosen diagram.
  • Engine type – Engine type.
  • Engine options – Engine options.
    • Initial time – Initial time.
    • Completion time – Completion time.
    • Time increment – Time increment.
    • Simulator name – Simulator name
    • Simulator options – Simulator options
      • Absolute tolerance – Absolute tolerance.
      • Relative tolerance – Relative tolerance.
      • Statistics mode – Statistics mode
      • Integration method – Integration method (ADAMS or BDF)
      • Inner linear solver type – Inner linear solver type
      • Jacobian approximation type – Jacobian approximation type
      • Steps limit – Limitation for solver steps count
      • Minimum time step – minimum time step
      • Maximum time step inversed – 1 / maximum time step
      • Mu – Upper bandwidth of Banded Jacobian
      • Ml – Lower bandwidth of Banded Jacobian