Difference between revisions of "Compute coverage by window (analysis)"
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Revision as of 18:15, 9 December 2020
- Analysis title
Compute coverage by window
- Provider
- Institute of Systems Biology
- Class
TrackCoverageAnalysis- Plugin
- ru.biosoft.bsa (Bio-sequences analyses plugin)
Description
Calculates the coverage of given track in fixed windows.
Parameters:
- Input track – Track to calculate coverage for
- Sequences – Collection of sequences
- Sequences source – Select database to get sequences from or 'Custom' to specify sequences location manually
- Sequence collection – Specify path to folder containing sequences if 'Custom' sequences source is selected
- Window size – Size of the window to average the coverage
- Step – Number of bp to step (at least 1000)
- Output empty intervals – When checked, intervals without single site will appear in the output table as well
- Output table – Path to the output table
