Difference between revisions of "Parameter identifiability (optimization) (analysis)"

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* '''Optimization''' – Path to optimization data
 
* '''Optimization''' – Path to optimization data
 +
* '''Parameters''' (expert) – Parameters to check identifiability
 
* '''Experiment names''' (expert) – Names of experiments to use (if empty all experiments will be used)
 
* '''Experiment names''' (expert) – Names of experiments to use (if empty all experiments will be used)
* '''Step size''' – Value of default step size during parameter identifiability testing
 
 
* '''Maximum identifiability steps''' – Maximum number of steps during parameter identifiability testing (in one direction)
 
* '''Maximum identifiability steps''' – Maximum number of steps during parameter identifiability testing (in one direction)
* '''Degrees of freedom''' – Number of degrees of freedom
+
* '''Maximal deviation''' – Maximal deviation from initial objective function value (delta)
* '''Confidence level''' – Confidence level which is used to define confidence interval
+
* '''Plot element type''' (expert) Type of created result plot elements
 
* '''Output path''' – Path to the output table
 
* '''Output path''' – Path to the output table
  

Revision as of 16:32, 12 March 2019

Analysis title
Default-analysis-icon.png Parameter identifiability (optimization)
Provider
Institute of Systems Biology
Class
IdentifiabilityOnOptimizationAnalysis
Plugin
biouml.plugins.optimization (Optimization plug-in)

Description

Parameter identifiability which uses optimization as input

Parameters:

  • Optimization – Path to optimization data
  • Parameters (expert) – Parameters to check identifiability
  • Experiment names (expert) – Names of experiments to use (if empty all experiments will be used)
  • Maximum identifiability steps – Maximum number of steps during parameter identifiability testing (in one direction)
  • Maximal deviation – Maximal deviation from initial objective function value (delta)
  • Plot element type (expert) – Type of created result plot elements
  • Output path – Path to the output table
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