Difference between revisions of "Isoform TE (analysis)"

Revision as of 19:01, 13 February 2017

Translation efficency of splice isoforms

Ribo-seq alignments – Alignments of ribo-seq reads to the set of coding sequences, should include unmapped reads and sorted by read name
mRNA-seq alignments – Alignments of mRNA-seq reads to the set of transcripts, should include unmapped reads and sorted by read name
Transcript set – Transcript set
- Annotation source – Source of gene annotation
- Transcripts annotation track – Track with transcripts annotation in BED format
- Genome sequence – Collection of chromosomal sequences
- Ensembl – Ensembl database version
- Transcript subset – Subset of transcripts used in this analysis
- GTF file – GTF file
cdsOverhangs – cdsOverhangs
Number of samples (expert) – Number of samples taken by gibbs sampler
Output table – Output table