Difference between revisions of "Ribo-Seq and mRNA features forming (analysis)"
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Revision as of 12:20, 25 August 2015
- Analysis title
Ribo-Seq and mRNA features forming
- Provider
- Institute of Systems Biology
- Class
RiboSeqAndMrnaFeaturesForming- Plugin
- biouml.plugins.bindingregions (Binding-regions related analyses)
Description
Create data matrix with Ribo-Seq and mRNA features and write it as TableDataCollection
Parameters:
- Ribo-Seq data set name – Select Ribo-Seq data set
- Path to folder with data sets – Path to folder with data sets
- Sequences collection – Select a source of nucleotide sequences
- Sequences source – Select database to get sequences from or 'Custom' to specify sequences location manually
- Sequence collection – Specify path to folder containing sequences if 'Custom' sequences source is selected
- Input track – Path to domestic track with Ribo-Seq dataset
- Minimal reads number threshold – Peaks for which number of reads exeeds this threshold will be analized
- Start codon type – Start codon type
- mRNA and Ribo-Seq features – Select mRNA and Ribo-Seq features
- Do exclude missing data? – Do exclude missing data? (If 'no' then possible missing data will be included as NaN-values
- Output table path – Path to the output table
