Difference between revisions of "IPS ROC-curves (analysis)"
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==== Parameters: ==== | ==== Parameters: ==== | ||
| − | * ''' | + | * '''Sequences collection''' – Select a source of nucleotide sequences |
| + | ** '''Sequences source''' – Select database to get sequences from or <nowiki>'</nowiki>Custom<nowiki>'</nowiki> to specify sequences location manually | ||
| + | ** '''Sequence collection''' – Specify path to folder containing sequences if <nowiki>'</nowiki>Custom<nowiki>'</nowiki> sequences source is selected | ||
| + | * '''Input track''' – Select input ChIP-seq track (must be the result of MACS or SISSRs analysis) | ||
| + | * '''Minimal region length''' – Minimal length of sequence region | ||
| + | * '''Is around summit''' – Is around summit | ||
* '''Matrix''' – Path to positional weight matrix | * '''Matrix''' – Path to positional weight matrix | ||
| − | * ''' | + | * '''Is IPS model?''' – Is IPS model? Otherwise multiplicative IPS model will be used |
| − | * ''' | + | * '''Path to output folder''' – Output folder will be created under this location |
| − | + | ||
[[Category:Analyses]] | [[Category:Analyses]] | ||
Revision as of 16:17, 11 December 2014
- Analysis title
IPS ROC-curves
- Provider
- Institute of Systems Biology
- Class
IPSROCCurve- Plugin
- biouml.plugins.bindingregions (Binding-regions related analyses)
Description
ROC-curves: influence of common score threshold on IPSSiteModel (or logIPSSiteModel) in merged binding regions
Parameters:
- Sequences collection – Select a source of nucleotide sequences
- Sequences source – Select database to get sequences from or 'Custom' to specify sequences location manually
- Sequence collection – Specify path to folder containing sequences if 'Custom' sequences source is selected
- Input track – Select input ChIP-seq track (must be the result of MACS or SISSRs analysis)
- Minimal region length – Minimal length of sequence region
- Is around summit – Is around summit
- Matrix – Path to positional weight matrix
- Is IPS model? – Is IPS model? Otherwise multiplicative IPS model will be used
- Path to output folder – Output folder will be created under this location
