Difference between revisions of "Peak finders comparison (analysis)"

From BioUML platform
Jump to: navigation, search
(Automatic synchronization with BioUML)

Revision as of 11:19, 13 January 2014

Analysis title
Default-analysis-icon.png Peak finders comparison
Provider
Institute of Systems Biology
Class
PeakFindersComparison
Plugin
biouml.plugins.bindingregions (Binding-regions related analyses)

Description

Comparison of two peak finders (for example, MACS and SISSRs): lengths and numbers of TF-binding regions are compared

Parameters:

  • Species – Select a taxonomical species
  • First folder containing ChIP-seq tracks – First folder containing ChIP-seq tracks (created by the 1-st peak finder)
  • Second folder containing ChIP-seq tracks – Second folder containing ChIP-seq tracks (created by the 2-nd peak finder)
  • Path to output folder – Output folder will be created under this location
Personal tools
Namespaces

Variants
Actions
BioUML platform
Community
Modelling
Analysis & Workflows
Collaborative research
Development
Virtual biology
Wiki
Toolbox