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| | {| class="wikitable" | | {| class="wikitable" |
| | !Release!!Description!!Date | | !Release!!Description!!Date |
| − | |-
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| − | |v. 0.9.6
| |
| − | |
| |
| − | *BioUML workbench (desktop version)
| |
| − | **integration of Galaxy
| |
| − | **rule based modelling (implementation of BioNetGen approach, [[BioNetGen|details]])
| |
| − | **Antimony support ([[Antimony|details]])
| |
| − | **Synchronisation between textual and graphical model representation (BioNetGen, Antimony)
| |
| − |
| |
| − | *Interface improvements
| |
| − | **display name and actions for table cell values
| |
| − |
| |
| − | *R integration
| |
| − | **improved interface and bug fixes
| |
| − | **possibility to call BioUML from R using rbiouml package (http://cran.r-project.org/web/packages/rbiouml)
| |
| − |
| |
| − | *JavaScript support (web version)
| |
| − | ** new JavaScript editor, CodeMirror (http://codemirror.net/).
| |
| − |
| |
| − | *GTRD database
| |
| − | **perspective
| |
| − | **special start page
| |
| − | **improved web interface
| |
| − |
| |
| − | *New methods for analysis of transcription factor binding sites
| |
| − | |2013, November
| |
| | |- | | |- |
| | |v. 0.9.7 | | |v. 0.9.7 |
Revision as of 14:01, 18 November 2013
This page describes the current plans for BioUML platform development in 2013 and includes a list of desired features that are not scheduled yet.
Users, administrators and developers are welcome with their comments and suggestions about new features as well as feature implementation priorities.
For this purpose, please, use the BioUML forum.
Plans for 2013-2014
| Release |
Description |
Date
|
| v. 0.9.7
|
- Server
- grid version - pilot task manager integration with SGE via DRMAA virtualisation
- repository - packages for Red Hat and Debian
- Puppet cookbooks for server updates
- NGS
|
2013, December
|
| v. 0.9.8
|
- Web interface
- mobile version (for web-browser)
- web interface improvements diagrams - convenient for exchange and editing
|
2014, Q1
|
Other desired features
| Component |
Features |
Priority
|
| Core
|
*Major refactoring: complex, macromolecule state, reaction
- Parameters fitting - optimization process as a workflow
- SED-ML as workflow
- Save optimization results as the diagram state
- SBGN-XML support
- Implementation of OQL subset for access to databases via BioUML object model
|
moderate
|
| Databases
|
- KEGG support improvements:
- Diagram export (KGML, BioPAX, SBML, +SVG, +PNG, +JPEG)
- Set up wizard
|
low
|
| Misc.
|
- SBRML support
- Further integration with MATLAB
|
low
|
See also
