Difference between revisions of "MicroRNA finder (analysis)"
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Revision as of 18:38, 16 July 2013
- Analysis title
MicroRNA finder
- Provider
- Institute of Systems Biology
- Class
MicroRNAFinder- Plugin
- ru.biosoft.bsa (Bio-sequences analyses plugin)
Description
Finds novel microRNA from genomic alignments of NGS reads
Parameters:
- Alignments – Genomic alignments of microRNA reads
- Genome – Reference genome used for alignment
- Sequences source – Select database to get sequences from or 'Custom' to specify sequences location manually
- Sequence collection – Specify path to folder containing sequences if 'Custom' sequences source is selected
- Minimal cluster size – Minimal number of reads in cluster
- Maximum read distance – Maxim distance between adjacent reads in cluster
- Clusters – Resulting read clusters
- Primary isoforms – Resulting primary microRNA isoforms
- Longest isoforms – Resulting longest microRNA isoforms
