Difference between revisions of "Merge binding regions for cell-lines (analysis)"

Revision as of 17:16, 6 June 2013

Analysis title: File:Binding-regions-Merge-binding-regions-for-cell-lines-icon.png Merge binding regions for cell-lines
Provider: Institute of Systems Biology
Class: MergeCellLineBindingRegions
Plugin: ru.biosoft.bsa (Bio-sequences analyses plugin)

Create cell-specific tracks with merged binding regions (creation of tables: 'bindingRegions_in_[CellLine*]')

Sequences collection – Select a source of nucleotide sequences
- Sequences source – Select database to get sequences from or 'Custom' to specify sequences location manually
- Sequence collection – Specify path to folder containing sequences if 'Custom' sequences source is selected
Folder containing ChIP-seq tracks – Folder containing ChIP-seq tracks
Species – Select a taxonomical species
Cell line synonyms table – Cell line synonyms table (must contain the 'newNameOfCellLine' column)
Chromosome gaps table – Table containing chromosome gaps information (output of "Gathering genome statistics" analysis)
Path to output folder – Output folder will be created under this location