Difference between revisions of "SAM or BAM alignment file"
From BioUML platform
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;File format title | ;File format title | ||
:SAM or BAM alignment file (*.sam, *.bam) | :SAM or BAM alignment file (*.sam, *.bam) | ||
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| + | :[[File:Type-track-icon.png]] [[Track (element type)|track]] | ||
;Plugin | ;Plugin | ||
:[[Ru.biosoft.bsa (plugin)|ru.biosoft.bsa (Bio-sequences analyses plugin)]] | :[[Ru.biosoft.bsa (plugin)|ru.biosoft.bsa (Bio-sequences analyses plugin)]] | ||
Revision as of 13:47, 16 May 2013
- File format title
- SAM or BAM alignment file (*.sam, *.bam)
- Element type
track
- Plugin
- ru.biosoft.bsa (Bio-sequences analyses plugin)
SAM or BAM alignment file (*.sam, *.bam)
Import SAM/BAM file
Parameters:
- File to import – Specify file from your computer
- Target – Path in repository to put imported file to
- Properties – Additional importer parameters
- Sequences source – Select database to get sequences from or 'Custom' to specify sequences location manually
- Sequence collection – Sequence collection
- Genome ID string – Something like 'hg18' or 'mm6'
- Create index – Create index (can take a long time)
