Difference between revisions of "ChIP-seq peak profile (analysis)"

Revision as of 15:21, 4 April 2013

This analysis allows you to compute probability profiles for Chip-seq peaks.

Parameters:

• Peak track – Track with ChIP-seq peaks
• Tag track – Track with aligned tags (reads)
• Fragment size – Mean size of DNA fragments used in immunoprecipitation
• Sigma – Sigma parameter used to model peak shape
• Error rate – Error rate
• Profiled track – Profiled track